J3_5E81_019

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUACC*GGGCGA

Length

27 nucleotides

Bulged bases

5E81|1|1G|A|975, 5E81|1|1G|G|976, 5E81|1|1G|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5E81_019 not in the Motif Atlas

Geometric match to J3_6CZR_062

Geometric discrepancy: 0.2017

The information below is about J3_6CZR_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_59791.1

Basepair signature

cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

5E81|1|1G|U|955
5E81|1|1G|U|956
5E81|1|1G|U|957
5E81|1|1G|A|958
5E81|1|1G|A|959
5E81|1|1G|U|960
5E81|1|1G|U|961
5E81|1|1G|C|962
*
5E81|1|1G|G|973
5E81|1|1G|A|974
5E81|1|1G|A|975
5E81|1|1G|G|976
5E81|1|1G|A|977
5E81|1|1G|A|978
5E81|1|1G|C|979
5E81|1|1G|C|980
5E81|1|1G|U|981
5E81|1|1G|U|982
5E81|1|1G|A|983
5E81|1|1G|C|984
5E81|1|1G|C|985
*
5E81|1|1G|G|1220
5E81|1|1G|G|1221
5E81|1|1G|G|1222
5E81|1|1G|C|1223
5E81|1|1G|G|1224
5E81|1|1G|A|1225

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1A

30S ribosomal protein S10

Chain 1L

Transfer RNA; tRNA

Chain 4A

30S ribosomal protein S13

Chain 5A

30S ribosomal protein S14 type Z

Chain AA

30S ribosomal protein S19