J3_5E81_046

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

5E81|1|14|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5E81_046 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.1333

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

5E81|1|14|G|1344
5E81|1|14|C|1345
5E81|1|14|G|1346
5E81|1|14|G|1347
5E81|1|14|G|1348
5E81|1|14|A|1349
5E81|1|14|C|1350
*
5E81|1|14|G|1381
5E81|1|14|G|1382
5E81|1|14|C|1383
5E81|1|14|A|1384
5E81|1|14|G|1385
*
5E81|1|14|C|1402
5E81|1|14|C|1403

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23