J3_5E81_062
3D structure
- PDB id
- 5E81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 5E81|1|1H|U|271|||C
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5E81_062 not in the Motif Atlas
- Homologous match to J3_9DFE_005
- Geometric discrepancy: 0.1242
- The information below is about J3_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97971.2
- Basepair signature
- cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5E81|1|1H|U|269
5E81|1|1H|A|270
5E81|1|1H|A|270|||A
5E81|1|1H|A|270|||B
5E81|1|1H|C|270|||C
*
5E81|1|1H|G|270|||W
5E81|1|1H|G|270|||X
5E81|1|1H|G|270|||Y
5E81|1|1H|U|270|||Z
5E81|1|1H|C|271|||A
5E81|1|1H|G|271|||B
5E81|1|1H|U|271|||C
5E81|1|1H|G|271
*
5E81|1|1H|C|366
5E81|1|1H|G|370
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 61
- 50S ribosomal protein L9
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