3D structure

PDB id
5EL4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5EL4_002 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.1114
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

5EL4|1|13|C|936
5EL4|1|13|A|937
5EL4|1|13|A|938
5EL4|1|13|G|939
*
5EL4|1|13|C|1344
5EL4|1|13|U|1345
5EL4|1|13|A|1346
5EL4|1|13|G|1347
5EL4|1|13|U|1348
5EL4|1|13|A|1349
5EL4|1|13|A|1350
*
5EL4|1|13|U|1372
5EL4|1|13|G|1373
5EL4|1|13|A|1374
5EL4|1|13|A|1375
5EL4|1|13|U|1376
5EL4|1|13|A|1377
5EL4|1|13|C|1378
5EL4|1|13|G|1379

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain 3K
Transfer RNA; tRNA
Chain 6E
30S ribosomal protein S7
Chain 8E
30S ribosomal protein S9

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