3D structure

PDB id
5EL4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
CAUC*GUU*AUUAAAG
Length
14 nucleotides
Bulged bases
5EL4|1|14|A|2518
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5EL4_016 not in the Motif Atlas
Homologous match to J3_7RQB_012
Geometric discrepancy: 0.0658
The information below is about J3_7RQB_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.3
Basepair signature
cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
4

Unit IDs

5EL4|1|14|C|2517
5EL4|1|14|A|2518
5EL4|1|14|U|2519
5EL4|1|14|C|2520
*
5EL4|1|14|G|2545
5EL4|1|14|U|2546
5EL4|1|14|U|2547
*
5EL4|1|14|A|2561
5EL4|1|14|U|2562
5EL4|1|14|U|2563
5EL4|1|14|A|2564
5EL4|1|14|A|2565
5EL4|1|14|A|2566
5EL4|1|14|G|2567

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L13
Chain 25
50S ribosomal protein L14

Coloring options:


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