3D structure

PDB id
5EL4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
CUUG*CAG*CUUACG
Length
13 nucleotides
Bulged bases
5EL4|1|1G|U|1212
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5EL4_021 not in the Motif Atlas
Homologous match to J3_4LFB_005
Geometric discrepancy: 0.2739
The information below is about J3_4LFB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82572.1
Basepair signature
cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
Number of instances in this motif group
2

Unit IDs

5EL4|1|1G|C|990
5EL4|1|1G|U|991
5EL4|1|1G|U|992
5EL4|1|1G|G|993
*
5EL4|1|1G|C|1045
5EL4|1|1G|A|1046
5EL4|1|1G|G|1047
*
5EL4|1|1G|C|1210
5EL4|1|1G|U|1211
5EL4|1|1G|U|1212
5EL4|1|1G|A|1213
5EL4|1|1G|C|1214
5EL4|1|1G|G|1215

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain 5A
30S ribosomal protein S14 type Z

Coloring options:


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