3D structure

PDB id
5EL5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
CGAGCUA*UAG*CGAG
Length
14 nucleotides
Bulged bases
5EL5|1|1H|G|686, 5EL5|1|1H|G|792
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5EL5_024 not in the Motif Atlas
Homologous match to J3_7RQB_004
Geometric discrepancy: 0.0949
The information below is about J3_7RQB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.4
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

5EL5|1|1H|C|683
5EL5|1|1H|G|684
5EL5|1|1H|A|685
5EL5|1|1H|G|686
5EL5|1|1H|C|687
5EL5|1|1H|U|688
5EL5|1|1H|A|689
*
5EL5|1|1H|U|773
5EL5|1|1H|A|774
5EL5|1|1H|G|775
*
5EL5|1|1H|C|791
5EL5|1|1H|G|792
5EL5|1|1H|A|793
5EL5|1|1H|G|794

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 11
50S ribosomal protein L2
Chain P8
50S ribosomal protein L34

Coloring options:


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