J3_5EL6_041
3D structure
- PDB id
- 5EL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 5EL6|1|13|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5EL6_041 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.1574
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.1
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5EL6|1|13|C|1116
5EL6|1|13|G|1117
5EL6|1|13|C|1118
*
5EL6|1|13|G|1155
5EL6|1|13|G|1156
5EL6|1|13|A|1157
5EL6|1|13|C|1158
5EL6|1|13|U|1159
5EL6|1|13|G|1160
5EL6|1|13|C|1161
*
5EL6|1|13|G|1175
5EL6|1|13|A|1176
5EL6|1|13|G|1177
5EL6|1|13|G|1178
5EL6|1|13|A|1179
5EL6|1|13|A|1180
5EL6|1|13|G|1181
5EL6|1|13|G|1182
5EL6|1|13|A|1183
5EL6|1|13|G|1184
Current chains
- Chain 13
- 16S rRNA
Nearby chains
- Chain 1E
- 30S ribosomal protein S2
- Chain 1I
- 30S ribosomal protein S10
- Chain 5I
- 30S ribosomal protein S14 type Z
- Chain 8E
- 30S ribosomal protein S9
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