J3_5EL6_044
3D structure
- PDB id
- 5EL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5EL6|1|14|C|34, 5EL6|1|14|U|448, 5EL6|1|14|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5EL6_044 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0874
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
5EL6|1|14|C|32
5EL6|1|14|U|33
5EL6|1|14|C|34
5EL6|1|14|G|35
*
5EL6|1|14|C|445
5EL6|1|14|G|446
5EL6|1|14|A|447
5EL6|1|14|U|448
5EL6|1|14|A|449
5EL6|1|14|G|450
5EL6|1|14|C|451
5EL6|1|14|G|452
5EL6|1|14|C|453
5EL6|1|14|A|454
5EL6|1|14|C|455
5EL6|1|14|C|456
5EL6|1|14|A|457
5EL6|1|14|G|458
5EL6|1|14|U|459
5EL6|1|14|A|460
5EL6|1|14|C|461
*
5EL6|1|14|G|468
5EL6|1|14|G|469
5EL6|1|14|A|470
5EL6|1|14|A|471
5EL6|1|14|A|472
5EL6|1|14|G|473
Current chains
- Chain 14
- 23S rRNA
Nearby chains
- Chain 39
- 50S ribosomal protein L4
- Chain 85
- 50S ribosomal protein L20
- Chain B5
- 50S ribosomal protein L23
- Chain L5
- 50S ribosomal protein L34
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