J3_5EL7_005
3D structure
- PDB id
- 5EL7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GACGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5EL7_005 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.0756
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5EL7|1|13|C|1063
5EL7|1|13|G|1064
5EL7|1|13|U|1065
5EL7|1|13|C|1066
5EL7|1|13|A|1067
5EL7|1|13|G|1068
*
5EL7|1|13|C|1107
5EL7|1|13|G|1108
5EL7|1|13|C|1109
5EL7|1|13|A|1110
5EL7|1|13|A|1111
5EL7|1|13|C|1112
5EL7|1|13|C|1113
*
5EL7|1|13|G|1187
5EL7|1|13|A|1188
5EL7|1|13|C|1189
5EL7|1|13|G|1190
5EL7|1|13|A|1191
5EL7|1|13|C|1192
5EL7|1|13|G|1193
Current chains
- Chain 13
- 16S rRNA
Nearby chains
- Chain 1E
- 30S ribosomal protein S2
- Chain 1I
- 30S ribosomal protein S10
- Chain 2E
- 30S ribosomal protein S3
- Chain 4E
- 30S ribosomal protein S5
- Chain 5I
- 30S ribosomal protein S14 type Z
- Chain 6E
- 30S ribosomal protein S7
- Chain 8E
- 30S ribosomal protein S9
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