J3_5EL7_008

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

5EL7|1|14|G|686, 5EL7|1|14|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5EL7_008 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1186

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5EL7|1|14|C|683
5EL7|1|14|G|684
5EL7|1|14|A|685
5EL7|1|14|G|686
5EL7|1|14|C|687
5EL7|1|14|U|688
5EL7|1|14|A|689
*
5EL7|1|14|U|773
5EL7|1|14|A|774
5EL7|1|14|G|775
*
5EL7|1|14|C|791
5EL7|1|14|G|792
5EL7|1|14|A|793
5EL7|1|14|G|794

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain L5

50S ribosomal protein L34