3D structure

PDB id
5EL7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
CGUCAG*CGCAACC*GACGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5EL7_022 not in the Motif Atlas
Geometric match to J3_4LFB_007
Geometric discrepancy: 0.1155
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

5EL7|1|1G|C|1063
5EL7|1|1G|G|1064
5EL7|1|1G|U|1065
5EL7|1|1G|C|1066
5EL7|1|1G|A|1067
5EL7|1|1G|G|1068
*
5EL7|1|1G|C|1107
5EL7|1|1G|G|1108
5EL7|1|1G|C|1109
5EL7|1|1G|A|1110
5EL7|1|1G|A|1111
5EL7|1|1G|C|1112
5EL7|1|1G|C|1113
*
5EL7|1|1G|G|1187
5EL7|1|1G|A|1188
5EL7|1|1G|C|1189
5EL7|1|1G|G|1190
5EL7|1|1G|A|1191
5EL7|1|1G|C|1192
5EL7|1|1G|G|1193

Current chains

Chain 1G
16S rRNA

Nearby chains

Chain 1A
30S ribosomal protein S10
Chain 22
30S ribosomal protein S3
Chain 42
30S ribosomal protein S5
Chain 5A
30S ribosomal protein S14 type Z
Chain 62
30S ribosomal protein S7
Chain 82
30S ribosomal protein S9

Coloring options:


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