J3_5EL7_030

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUC*GAG*UAGAAG

Length

12 nucleotides

Bulged bases

5EL7|1|1H|G|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5EL7_030 not in the Motif Atlas

Homologous match to J3_7RQB_011

Geometric discrepancy: 0.095

The information below is about J3_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91491.4

Basepair signature

cWW-F-tWW-tHW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

5EL7|1|1H|C|2295
5EL7|1|1H|U|2296
5EL7|1|1H|C|2297
*
5EL7|1|1H|G|2321
5EL7|1|1H|A|2322
5EL7|1|1H|G|2323
*
5EL7|1|1H|U|2332
5EL7|1|1H|A|2333
5EL7|1|1H|G|2334
5EL7|1|1H|A|2335
5EL7|1|1H|A|2336
5EL7|1|1H|G|2337

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 16

5S ribosomal RNA; 5S rRNA

Chain 2K

Transfer RNA; tRNA

Chain 41

50S ribosomal protein L5

Chain A8

50S ribosomal protein L18

Chain I8

50S ribosomal protein L27