J3_5EL7_032

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

5EL7|1|1H|A|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5EL7_032 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.2189

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

5EL7|1|1H|C|2789
5EL7|1|1H|A|2790
5EL7|1|1H|C|2791
*
5EL7|1|1H|G|2805
5EL7|1|1H|G|2807
5EL7|1|1H|U|2808
5EL7|1|1H|A|2809
5EL7|1|1H|A|2810
5EL7|1|1H|G|2811
*
5EL7|1|1H|C|2889
5EL7|1|1H|G|2891
5EL7|1|1H|A|2892
5EL7|1|1H|G|2893
5EL7|1|1H|G|2894

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 21

50S ribosomal protein L3