J3_5EL7_045

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

5EL7|1|14|U|271|||C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5EL7_045 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.1691

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5EL7|1|14|U|269
5EL7|1|14|A|270
5EL7|1|14|A|270|||A
5EL7|1|14|A|270|||B
5EL7|1|14|C|270|||C
*
5EL7|1|14|G|270|||W
5EL7|1|14|G|270|||X
5EL7|1|14|G|270|||Y
5EL7|1|14|U|270|||Z
5EL7|1|14|C|271|||A
5EL7|1|14|G|271|||B
5EL7|1|14|U|271|||C
5EL7|1|14|G|271
*
5EL7|1|14|C|366
5EL7|1|14|G|370

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 69

50S ribosomal protein L9