J3_5EL7_047

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

5EL7|1|14|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5EL7_047 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.1486

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

5EL7|1|14|G|1344
5EL7|1|14|C|1345
5EL7|1|14|G|1346
5EL7|1|14|G|1347
5EL7|1|14|G|1348
5EL7|1|14|A|1349
5EL7|1|14|C|1350
*
5EL7|1|14|G|1381
5EL7|1|14|G|1382
5EL7|1|14|C|1383
5EL7|1|14|A|1384
5EL7|1|14|G|1385
*
5EL7|1|14|C|1402
5EL7|1|14|C|1403

Current chains

Chain 14

23S rRNA

Nearby chains

Chain B5

50S ribosomal protein L23