3D structure

PDB id
5EL7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
CGG*CUAGA*UGACG
Length
13 nucleotides
Bulged bases
5EL7|1|1G|A|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5EL7_055 not in the Motif Atlas
Homologous match to J3_4LFB_015
Geometric discrepancy: 0.112
The information below is about J3_4LFB_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

5EL7|1|1G|C|586
5EL7|1|1G|G|587
5EL7|1|1G|G|588
*
5EL7|1|1G|C|651
5EL7|1|1G|U|652
5EL7|1|1G|A|653
5EL7|1|1G|G|654
5EL7|1|1G|A|655
*
5EL7|1|1G|U|751
5EL7|1|1G|G|752
5EL7|1|1G|A|753
5EL7|1|1G|C|754
5EL7|1|1G|G|755

Current chains

Chain 1G
16S rRNA

Nearby chains

Chain 3A
30S ribosomal protein S12
Chain 6A
30S ribosomal protein S15
Chain 72
30S ribosomal protein S8
Chain 8A
30S ribosomal protein S17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4896 s