J3_5F8K_001
3D structure
- PDB id
- 5F8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAGCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 5F8K|1|1A|G|733, 5F8K|1|1A|G|839
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5F8K_001 not in the Motif Atlas
- Homologous match to J3_7RQB_004
- Geometric discrepancy: 0.047
- The information below is about J3_7RQB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.4
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5F8K|1|1A|C|730
5F8K|1|1A|G|731
5F8K|1|1A|A|732
5F8K|1|1A|G|733
5F8K|1|1A|C|734
5F8K|1|1A|U|735
5F8K|1|1A|A|736
*
5F8K|1|1A|U|820
5F8K|1|1A|A|821
5F8K|1|1A|G|822
*
5F8K|1|1A|C|838
5F8K|1|1A|G|839
5F8K|1|1A|A|840
5F8K|1|1A|G|841
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1D
- 50S ribosomal protein L2
Coloring options: