J3_5F8K_027

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5F8K|1|2A|A|2518, 5F8K|1|2A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5F8K_027 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.0712

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

5F8K|1|2A|C|2517
5F8K|1|2A|A|2518
5F8K|1|2A|U|2519
5F8K|1|2A|C|2520
*
5F8K|1|2A|G|2545
5F8K|1|2A|U|2546
5F8K|1|2A|U|2547
*
5F8K|1|2A|A|2561
5F8K|1|2A|U|2562
5F8K|1|2A|U|2563
5F8K|1|2A|A|2564
5F8K|1|2A|A|2565
5F8K|1|2A|A|2566
5F8K|1|2A|G|2567

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2O

50S ribosomal protein L14