J3_5F8K_056
3D structure
- PDB id
- 5F8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5F8K|1|2A|C|34, 5F8K|1|2A|U|448, 5F8K|1|2A|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5F8K_056 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0709
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
5F8K|1|2A|C|32
5F8K|1|2A|U|33
5F8K|1|2A|C|34
5F8K|1|2A|G|35
*
5F8K|1|2A|C|445
5F8K|1|2A|G|446
5F8K|1|2A|A|447
5F8K|1|2A|U|448
5F8K|1|2A|A|449
5F8K|1|2A|G|450
5F8K|1|2A|C|451
5F8K|1|2A|G|452
5F8K|1|2A|C|453
5F8K|1|2A|A|454
5F8K|1|2A|C|455
5F8K|1|2A|C|456
5F8K|1|2A|A|457
5F8K|1|2A|G|458
5F8K|1|2A|U|459
5F8K|1|2A|A|460
5F8K|1|2A|C|461
*
5F8K|1|2A|G|468
5F8K|1|2A|G|469
5F8K|1|2A|A|470
5F8K|1|2A|A|471
5F8K|1|2A|A|472
5F8K|1|2A|G|473
Current chains
- Chain 2A
- 23S ribosomal RNA
Nearby chains
- Chain 27
- 50S ribosomal protein L34
- Chain 2F
- 50S ribosomal protein L4
- Chain 2U
- 50S ribosomal protein L20
- Chain 2X
- 50S ribosomal protein L23
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