J3_5F8K_059

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

5F8K|1|2A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5F8K_059 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0683

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

5F8K|1|2A|C|297
5F8K|1|2A|G|298
5F8K|1|2A|A|299
5F8K|1|2A|A|300
5F8K|1|2A|G|301
*
5F8K|1|2A|C|316
5F8K|1|2A|G|317
5F8K|1|2A|C|318
5F8K|1|2A|C|319
5F8K|1|2A|A|320
5F8K|1|2A|G|321
5F8K|1|2A|A|322
5F8K|1|2A|G|323
5F8K|1|2A|A|324
5F8K|1|2A|G|325
*
5F8K|1|2A|C|337
5F8K|1|2A|G|338
5F8K|1|2A|U|339
5F8K|1|2A|A|340
5F8K|1|2A|G|341

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24