J3_5FCI_004

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5FCI_004 not in the Motif Atlas

Geometric match to J3_5TBW_007

Geometric discrepancy: 0.0795

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

5FCI|1|1|G|1230
5FCI|1|1|A|1231
5FCI|1|1|C|1232
*
5FCI|1|1|G|1256
5FCI|1|1|C|1257
5FCI|1|1|U|1258
5FCI|1|1|A|1259
5FCI|1|1|A|1260
5FCI|1|1|G|1261
5FCI|1|1|G|1262
*
5FCI|1|1|C|1277
5FCI|1|1|A|1278
5FCI|1|1|C|1279

Current chains

Chain 1

25S ribosomal RNA

Nearby chains