J3_5FCI_014

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5FCI_014 not in the Motif Atlas

Homologous match to J3_8C3A_038

Geometric discrepancy: 0.1141

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5FCI|1|2|C|1161
5FCI|1|2|C|1162
5FCI|1|2|A|1163
5FCI|1|2|G|1164
*
5FCI|1|2|C|1581
5FCI|1|2|U|1582
5FCI|1|2|A|1583
5FCI|1|2|G|1584
5FCI|1|2|U|1585
5FCI|1|2|A|1586
5FCI|1|2|A|1587
*
5FCI|1|2|U|1609
5FCI|1|2|G|1610
5FCI|1|2|A|1611
5FCI|1|2|U|1612
5FCI|1|2|U|1613
5FCI|1|2|A|1614
5FCI|1|2|C|1615
5FCI|1|2|G|1616

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain D8

40S ribosomal protein S28-A

Chain S5

40S ribosomal protein S5