J3_5FCI_016
3D structure
- PDB id
- 5FCI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the vacant uL3 W255C mutant 80S yeast ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 5FCI|1|2|G|1199, 5FCI|1|2|G|1201, 5FCI|1|2|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5FCI_016 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.0835
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5FCI|1|2|C|1180
5FCI|1|2|U|1181
5FCI|1|2|U|1182
5FCI|1|2|A|1183
5FCI|1|2|A|1184
5FCI|1|2|U|1185
5FCI|1|2|U|1186
5FCI|1|2|U|1187
*
5FCI|1|2|G|1198
5FCI|1|2|G|1199
5FCI|1|2|G|1200
5FCI|1|2|G|1201
5FCI|1|2|A|1202
5FCI|1|2|A|1203
5FCI|1|2|A|1204
5FCI|1|2|C|1205
5FCI|1|2|U|1206
5FCI|1|2|C|1207
5FCI|1|2|A|1208
5FCI|1|2|C|1209
*
5FCI|1|2|G|1454
5FCI|1|2|G|1455
5FCI|1|2|C|1456
5FCI|1|2|C|1457
5FCI|1|2|G|1458
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C5
- 40S ribosomal protein S15
- Chain C8
- 40S ribosomal protein S18-A
- Chain D0
- 40S ribosomal protein S20
- Chain D9
- 40S ribosomal protein S29-A
- Chain E1
- 40S ribosomal protein S31
- Chain SM
- Suppressor protein STM1,Suppressor protein STM1
Coloring options: