J3_5FCI_060

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

5FCI|1|2|A|46, 5FCI|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5FCI_060 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0706

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5FCI|1|2|A|41
5FCI|1|2|G|42
5FCI|1|2|A|43
5FCI|1|2|U|44
5FCI|1|2|U|45
5FCI|1|2|A|46
5FCI|1|2|A|47
5FCI|1|2|G|48
*
5FCI|1|2|C|431
5FCI|1|2|G|432
5FCI|1|2|C|433
5FCI|1|2|G|434
5FCI|1|2|C|435
5FCI|1|2|A|436
5FCI|1|2|A|437
5FCI|1|2|A|438
5FCI|1|2|U|439
*
5FCI|1|2|A|464
5FCI|1|2|G|465
5FCI|1|2|U|466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain S9

40S ribosomal protein S9-A