J3_5FCJ_014

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5FCJ_014 not in the Motif Atlas

Homologous match to J3_8C3A_038

Geometric discrepancy: 0.1152

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5FCJ|1|2|C|1161
5FCJ|1|2|C|1162
5FCJ|1|2|A|1163
5FCJ|1|2|G|1164
*
5FCJ|1|2|C|1581
5FCJ|1|2|U|1582
5FCJ|1|2|A|1583
5FCJ|1|2|G|1584
5FCJ|1|2|U|1585
5FCJ|1|2|A|1586
5FCJ|1|2|A|1587
*
5FCJ|1|2|U|1609
5FCJ|1|2|G|1610
5FCJ|1|2|A|1611
5FCJ|1|2|U|1612
5FCJ|1|2|U|1613
5FCJ|1|2|A|1614
5FCJ|1|2|C|1615
5FCJ|1|2|G|1616

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain D8

40S ribosomal protein S28-A

Chain S5

40S ribosomal protein S5