J3_5FCJ_038

3D structure

PDB id

5FCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

5FCJ|1|6|A|1217, 5FCJ|1|6|G|1445, 5FCJ|1|6|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5FCJ_038 not in the Motif Atlas

Homologous match to J3_8P9A_079

Geometric discrepancy: 0.1443

The information below is about J3_8P9A_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_87797.2

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

3

Unit IDs

5FCJ|1|6|C|1215
5FCJ|1|6|C|1216
5FCJ|1|6|A|1217
5FCJ|1|6|G|1218
5FCJ|1|6|A|1219
5FCJ|1|6|C|1220
*
5FCJ|1|6|G|1263
5FCJ|1|6|G|1264
5FCJ|1|6|G|1265
5FCJ|1|6|U|1266
5FCJ|1|6|G|1267
*
5FCJ|1|6|U|1442
5FCJ|1|6|U|1443
5FCJ|1|6|A|1444
5FCJ|1|6|G|1445
5FCJ|1|6|A|1446
5FCJ|1|6|C|1447
5FCJ|1|6|G|1448

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c0

40S ribosomal protein S10-A,40S ribosomal protein S10-A,40S ribosomal protein S10-A,40S ribosomal protein S10-A

Chain d9

40S ribosomal protein S29-A

Chain e1

Ubiquitin-40S ribosomal protein S31