J3_8P9A_079

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8P9A|1|sR|A|1217, 8P9A|1|sR|G|1445, 8P9A|1|sR|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_87797.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8P9A|1|sR|C|1215
8P9A|1|sR|C|1216
8P9A|1|sR|A|1217
8P9A|1|sR|G|1218
8P9A|1|sR|A|1219
8P9A|1|sR|C|1220
*
8P9A|1|sR|G|1263
8P9A|1|sR|G|1264
8P9A|1|sR|G|1265
8P9A|1|sR|U|1266
8P9A|1|sR|G|1267
*
8P9A|1|sR|U|1442
8P9A|1|sR|U|1443
8P9A|1|sR|A|1444
8P9A|1|sR|G|1445
8P9A|1|sR|A|1446
8P9A|1|sR|C|1447
8P9A|1|sR|G|1448

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c0

40S ribosomal protein S10-A

Chain d9

Small ribosomal subunit protein uS14A