J3_5FDU_006
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5FDU_006 not in the Motif Atlas
- Homologous match to J3_7RQB_010
- Geometric discrepancy: 0.0509
- The information below is about J3_7RQB_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.3
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
5FDU|1|1A|U|2113
5FDU|1|1A|U|2114
5FDU|1|1A|G|2115
*
5FDU|1|1A|C|2218
5FDU|1|1A|U|2219
5FDU|1|1A|A|2220
5FDU|1|1A|A|2221
5FDU|1|1A|C|2222
*
5FDU|1|1A|G|2235
5FDU|1|1A|G|2236
5FDU|1|1A|A|2237
5FDU|1|1A|C|2238
5FDU|1|1A|A|2239
5FDU|1|1A|G|2240
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1D
- 50S ribosomal protein L2
- Chain 1I
- 50S ribosomal protein L9
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