J3_5FDU_039
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 5FDU|1|1A|U|288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5FDU_039 not in the Motif Atlas
- Homologous match to J3_9DFE_005
- Geometric discrepancy: 0.0774
- The information below is about J3_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97971.2
- Basepair signature
- cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5FDU|1|1A|U|258
5FDU|1|1A|A|259
5FDU|1|1A|A|260
5FDU|1|1A|A|261
5FDU|1|1A|C|262
*
5FDU|1|1A|G|282
5FDU|1|1A|G|283
5FDU|1|1A|G|284
5FDU|1|1A|U|285
5FDU|1|1A|C|286
5FDU|1|1A|G|287
5FDU|1|1A|U|288
5FDU|1|1A|G|289
*
5FDU|1|1A|C|396
5FDU|1|1A|G|397
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1I
- 50S ribosomal protein L9
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