J3_5FDU_059
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAG*CGCCAGAGAG*CGUAG
- Length
- 20 nucleotides
- Bulged bases
- 5FDU|1|2A|G|321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5FDU_059 not in the Motif Atlas
- Homologous match to J3_9DFE_006
- Geometric discrepancy: 0.0586
- The information below is about J3_9DFE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46299.2
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
5FDU|1|2A|C|297
5FDU|1|2A|G|298
5FDU|1|2A|A|299
5FDU|1|2A|A|300
5FDU|1|2A|G|301
*
5FDU|1|2A|C|316
5FDU|1|2A|G|317
5FDU|1|2A|C|318
5FDU|1|2A|C|319
5FDU|1|2A|A|320
5FDU|1|2A|G|321
5FDU|1|2A|A|322
5FDU|1|2A|G|323
5FDU|1|2A|A|324
5FDU|1|2A|G|325
*
5FDU|1|2A|C|337
5FDU|1|2A|G|338
5FDU|1|2A|U|339
5FDU|1|2A|A|340
5FDU|1|2A|G|341
Current chains
- Chain 2A
- 23S ribosomal RNA
Nearby chains
- Chain 2F
- 50S ribosomal protein L4
- Chain 2Y
- 50S ribosomal protein L24
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