J3_5FDU_060
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GCGGGAC*GGCAG*CC
- Length
- 14 nucleotides
- Bulged bases
- 5FDU|1|2A|A|1384
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5FDU_060 not in the Motif Atlas
- Homologous match to J3_9DFE_012
- Geometric discrepancy: 0.0688
- The information below is about J3_9DFE_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_31965.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
5FDU|1|2A|G|1344
5FDU|1|2A|C|1345
5FDU|1|2A|G|1346
5FDU|1|2A|G|1347
5FDU|1|2A|G|1348
5FDU|1|2A|A|1349
5FDU|1|2A|C|1350
*
5FDU|1|2A|G|1381
5FDU|1|2A|G|1382
5FDU|1|2A|C|1383
5FDU|1|2A|A|1384
5FDU|1|2A|G|1385
*
5FDU|1|2A|C|1402
5FDU|1|2A|C|1403
Current chains
- Chain 2A
- 23S ribosomal RNA
Nearby chains
- Chain 2X
- 50S ribosomal protein L23
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