J3_5FLX_006
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 5FLX|1|1|G|1256, 5FLX|1|1|A|1258, 5FLX|1|1|U|1519
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5FLX_006 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1859
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5FLX|1|1|C|1237
5FLX|1|1|U|1238
5FLX|1|1|U|1239
5FLX|1|1|A|1240
5FLX|1|1|A|1241
5FLX|1|1|U|1242
5FLX|1|1|U|1243
5FLX|1|1|U|1244
*
5FLX|1|1|G|1255
5FLX|1|1|G|1256
5FLX|1|1|G|1257
5FLX|1|1|A|1258
5FLX|1|1|A|1259
5FLX|1|1|A|1260
5FLX|1|1|C|1261
5FLX|1|1|C|1262
5FLX|1|1|U|1263
5FLX|1|1|C|1264
5FLX|1|1|A|1265
5FLX|1|1|C|1266
*
5FLX|1|1|G|1516
5FLX|1|1|G|1517
5FLX|1|1|C|1518
5FLX|1|1|U|1519
5FLX|1|1|G|1520
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain K
- 40S RIBOSOMAL PROTEIN S10
- Chain P
- 40S RIBOSOMAL PROTEIN S15
- Chain S
- 40S RIBOSOMAL PROTEIN S18
- Chain U
- 40S RIBOSOMAL PROTEIN S20
- Chain d
- 40S RIBOSOMAL PROTEIN S29
- Chain f
- UBIQUITIN-40S RIBOSOMAL PROTEIN S27A
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