J3_5FLX_008

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAG*CGAGAC*GCA

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FLX|1|1|U|1342
5FLX|1|1|U|1343
5FLX|1|1|A|1344
5FLX|1|1|G|1345
*
5FLX|1|1|C|1384
5FLX|1|1|G|1385
5FLX|1|1|A|1386
5FLX|1|1|G|1387
5FLX|1|1|A|1388
5FLX|1|1|C|1389
*
5FLX|1|1|G|1481
5FLX|1|1|C|1482
5FLX|1|1|A|1483

Current chains

Chain 1

18S RRNA

Nearby chains

Chain D

40S RIBOSOMAL PROTEIN S3

Chain Q

40S RIBOSOMAL PROTEIN S16

Chain R

40S RIBOSOMAL PROTEIN S17

Chain U

40S RIBOSOMAL PROTEIN S20

Chain d

40S RIBOSOMAL PROTEIN S29