J3_5FLX_011

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AG*CGCAAAUUA*UAGU

Length

15 nucleotides

Bulged bases

5FLX|1|1|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FLX|1|1|A|40
5FLX|1|1|G|41
*
5FLX|1|1|C|481
5FLX|1|1|G|482
5FLX|1|1|C|483
5FLX|1|1|A|484
5FLX|1|1|A|485
5FLX|1|1|A|486
5FLX|1|1|U|487
5FLX|1|1|U|488
5FLX|1|1|A|489
*
5FLX|1|1|U|511
5FLX|1|1|A|512
5FLX|1|1|G|513
5FLX|1|1|U|514

Current chains

Chain 1

18S RRNA

Nearby chains

Chain E

40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1

Chain J

40S RIBOSOMAL PROTEIN S9

Chain X

40S RIBOSOMAL PROTEIN S23

Chain Y

40S RIBOSOMAL PROTEIN S24