J3_5FLX_012
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGAUCAAAACCAACC*GCUUUG*CUAG
- Length
- 26 nucleotides
- Bulged bases
- 5FLX|1|1|C|228, 5FLX|1|1|A|229, 5FLX|1|1|U|285, 5FLX|1|1|U|286
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5FLX|1|1|C|223
5FLX|1|1|A|224
5FLX|1|1|G|225
5FLX|1|1|A|226
5FLX|1|1|U|227
5FLX|1|1|C|228
5FLX|1|1|A|229
5FLX|1|1|A|230
5FLX|1|1|A|231
5FLX|1|1|A|232
5FLX|1|1|C|233
5FLX|1|1|C|234
5FLX|1|1|A|235
5FLX|1|1|A|236
5FLX|1|1|C|237
5FLX|1|1|C|238
*
5FLX|1|1|G|283
5FLX|1|1|C|284
5FLX|1|1|U|285
5FLX|1|1|U|286
5FLX|1|1|U|287
5FLX|1|1|G|288
*
5FLX|1|1|C|295
5FLX|1|1|U|296
5FLX|1|1|A|297
5FLX|1|1|G|298
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain E
- 40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1
- Chain G
- 40S RIBOSOMAL PROTEIN S6
- Chain I
- 40S RIBOSOMAL PROTEIN S8
- Chain L
- 40S RIBOSOMAL PROTEIN S11
Coloring options: