J3_5G2X_001

3D structure

PDB id

5G2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure a of Group II Intron Complexed with its Reverse Transcriptase

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGCC*GGAAAGCG*CGCAAUG

Length

20 nucleotides

Bulged bases

5G2X|1|A|U|164

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5G2X|1|A|C|66
5G2X|1|A|A|67
5G2X|1|A|G|68
5G2X|1|A|C|69
5G2X|1|A|C|70
*
5G2X|1|A|G|116
5G2X|1|A|G|117
5G2X|1|A|A|118
5G2X|1|A|A|119
5G2X|1|A|A|120
5G2X|1|A|G|121
5G2X|1|A|C|122
5G2X|1|A|G|123
*
5G2X|1|A|C|159
5G2X|1|A|G|160
5G2X|1|A|C|161
5G2X|1|A|A|162
5G2X|1|A|A|163
5G2X|1|A|U|164
5G2X|1|A|G|165

Current chains

Chain A

GROUP II INTRON

Nearby chains

Chain B

5'-R(*CP*AP*CP*AP*UP*CP*CP*AP*UP*AP*AP*CP)-3'

Chain C

GROUP II INTRON-ENCODED PROTEIN LTRA