J3_5GAD_003

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5GAD_003 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1031

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

5GAD|1|A|G|1055
5GAD|1|A|G|1056
5GAD|1|A|A|1057
*
5GAD|1|A|U|1081
5GAD|1|A|U|1082
5GAD|1|A|U|1083
5GAD|1|A|A|1084
5GAD|1|A|A|1085
5GAD|1|A|A|1086
5GAD|1|A|G|1087
*
5GAD|1|A|C|1102
5GAD|1|A|A|1103
5GAD|1|A|C|1104

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L10

Chain J

50S ribosomal protein L11

Chain f

50S ribosomal protein L36