J3_5GAD_006

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5GAD_006 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0752

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5GAD|1|A|C|2091
5GAD|1|A|U|2092
5GAD|1|A|G|2093
*
5GAD|1|A|C|2196
5GAD|1|A|U|2197
5GAD|1|A|A|2198
5GAD|1|A|A|2199
5GAD|1|A|C|2200
*
5GAD|1|A|G|2223
5GAD|1|A|G|2224
5GAD|1|A|A|2225
5GAD|1|A|C|2226
5GAD|1|A|A|2227
5GAD|1|A|G|2228

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain Y

50S ribosomal protein L28