J3_5GAD_011

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5GAD_011 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0801

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

5GAD|1|A|G|30
5GAD|1|A|C|31
*
5GAD|1|A|G|474
5GAD|1|A|C|475
5GAD|1|A|G|476
5GAD|1|A|A|477
5GAD|1|A|A|478
5GAD|1|A|A|479
5GAD|1|A|A|480
5GAD|1|A|G|481
*
5GAD|1|A|C|509
5GAD|1|A|C|510

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L20

Chain V

50S ribosomal protein L24