J3_5GAG_006

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5GAG_006 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0777

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5GAG|1|A|C|2091
5GAG|1|A|U|2092
5GAG|1|A|G|2093
*
5GAG|1|A|C|2196
5GAG|1|A|U|2197
5GAG|1|A|A|2198
5GAG|1|A|A|2199
5GAG|1|A|C|2200
*
5GAG|1|A|G|2223
5GAG|1|A|G|2224
5GAG|1|A|A|2225
5GAG|1|A|C|2226
5GAG|1|A|A|2227
5GAG|1|A|G|2228

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain Y

50S ribosomal protein L28