J3_5GAK_013
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- GAUGAAAAG*CGUGAAAUUG*CAACGGAUCUC
- Length
- 30 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5GAK|1|1|G|368
5GAK|1|1|A|369
5GAK|1|1|U|370
5GAK|1|1|G|371
5GAK|1|1|A|372
5GAK|1|1|A|373
5GAK|1|1|A|374
5GAK|1|1|A|375
5GAK|1|1|G|376
*
5GAK|1|1|C|403
5GAK|1|1|G|404
5GAK|1|1|U|405
5GAK|1|1|G|406
5GAK|1|1|A|407
5GAK|1|1|A|408
5GAK|1|1|A|409
5GAK|1|1|U|410
5GAK|1|1|U|411
5GAK|1|1|G|412
*
5GAK|1|4|C|11
5GAK|1|4|A|12
5GAK|1|4|A|13
5GAK|1|4|C|14
5GAK|1|4|G|15
5GAK|1|4|G|16
5GAK|1|4|A|17
5GAK|1|4|U|18
5GAK|1|4|C|19
5GAK|1|4|U|20
5GAK|1|4|C|21
Current chains
- Chain 1
- 25S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L4-A
- Chain R
- 60S ribosomal protein L17-A
- Chain a
- 60S ribosomal protein L26-A
- Chain g
- 60S ribosomal protein L32
- Chain n
- 60S ribosomal protein L39
Coloring options: