3D structure

PDB id
5GAK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.88 Å

Loop

Sequence
UCGAUC*GGAAUC*GAA
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5GAK|1|1|U|1526
5GAK|1|1|C|1527
5GAK|1|1|G|1528
5GAK|1|1|A|1529
5GAK|1|1|U|1530
5GAK|1|1|C|1531
*
5GAK|1|1|G|1591
5GAK|1|1|G|1592
5GAK|1|1|A|1593
5GAK|1|1|A|1594
5GAK|1|1|U|1595
5GAK|1|1|C|1596
*
5GAK|1|1|G|1611
5GAK|1|1|A|1612
5GAK|1|1|A|1613

Current chains

Chain 1
25S rRNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain Z
60S ribosomal protein L25
Chain i
60S ribosomal protein L34-A
Chain m
60S ribosomal protein L38
Chain n
60S ribosomal protein L39

Coloring options:

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