J3_5GAK_016

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

UCGAUC*GGAAUC*GAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAK|1|1|U|1526
5GAK|1|1|C|1527
5GAK|1|1|G|1528
5GAK|1|1|A|1529
5GAK|1|1|U|1530
5GAK|1|1|C|1531
*
5GAK|1|1|G|1591
5GAK|1|1|G|1592
5GAK|1|1|A|1593
5GAK|1|1|A|1594
5GAK|1|1|U|1595
5GAK|1|1|C|1596
*
5GAK|1|1|G|1611
5GAK|1|1|A|1612
5GAK|1|1|A|1613

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain Z

60S ribosomal protein L25

Chain i

60S ribosomal protein L34-A

Chain m

60S ribosomal protein L38

Chain n

60S ribosomal protein L39