J3_5GAK_022
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 5GAK|1|1|A|3172, 5GAK|1|1|G|3173, 5GAK|1|1|A|3215, 5GAK|1|1|G|3216, 5GAK|1|1|C|3217, 5GAK|1|1|G|3219, 5GAK|1|1|A|3268, 5GAK|1|1|U|3270, 5GAK|1|1|C|3272, 5GAK|1|1|U|3277
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5GAK_022 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.2127
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5GAK|1|1|U|3171
5GAK|1|1|A|3172
5GAK|1|1|G|3173
5GAK|1|1|A|3174
5GAK|1|1|U|3175
5GAK|1|1|G|3176
*
5GAK|1|1|C|3212
5GAK|1|1|A|3213
5GAK|1|1|U|3214
5GAK|1|1|A|3215
5GAK|1|1|G|3216
5GAK|1|1|C|3217
5GAK|1|1|A|3218
5GAK|1|1|G|3219
5GAK|1|1|G|3220
*
5GAK|1|1|C|3265
5GAK|1|1|G|3266
5GAK|1|1|A|3267
5GAK|1|1|A|3268
5GAK|1|1|U|3269
5GAK|1|1|U|3270
5GAK|1|1|G|3271
5GAK|1|1|C|3272
5GAK|1|1|A|3273
5GAK|1|1|A|3274
5GAK|1|1|U|3275
5GAK|1|1|G|3276
5GAK|1|1|U|3277
5GAK|1|1|C|3278
5GAK|1|1|A|3279
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L6-A
- Chain O
- 60S ribosomal protein L14-B
- Chain Q
- 60S ribosomal protein L16-A
- Chain R
- 60S ribosomal protein L17-A
- Chain h
- 60S ribosomal protein L33-A
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