J3_5GAK_023
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 5GAK|1|3|U|12
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5GAK_023 not in the Motif Atlas
- Homologous match to J3_8C3A_059
- Geometric discrepancy: 0.2107
- The information below is about J3_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5GAK|1|3|C|9
5GAK|1|3|C|10
5GAK|1|3|A|11
5GAK|1|3|U|12
5GAK|1|3|A|13
5GAK|1|3|U|14
*
5GAK|1|3|A|66
5GAK|1|3|G|67
*
5GAK|1|3|U|111
5GAK|1|3|G|112
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- 60S ribosomal protein L5
- Chain V
- 60S ribosomal protein L21-A
- Chain s
- 60S ribosomal protein L10
Coloring options: