J3_5H4P_010
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5H4P_010 not in the Motif Atlas
- Homologous match to J3_5TBW_012
- Geometric discrepancy: 0.0876
- The information below is about J3_5TBW_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
5H4P|1|1|A|2432
5H4P|1|1|U|2433
5H4P|1|1|U|2434
5H4P|1|1|G|2435
*
5H4P|1|1|C|2512
5H4P|1|1|U|2513
5H4P|1|1|U|2514
5H4P|1|1|A|2515
5H4P|1|1|U|2516
5H4P|1|1|U|2517
*
5H4P|1|1|A|2590
5H4P|1|1|A|2591
5H4P|1|1|G|2592
5H4P|1|1|A|2593
5H4P|1|1|C|2594
5H4P|1|1|A|2595
5H4P|1|1|U|2596
5H4P|1|1|U|2597
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- 60S ribosomal protein L8-A
- Chain N
- 60S ribosomal protein L15-A
- Chain i
- 60S ribosomal protein L36-A
Coloring options: