Motif J3_18654.1 Version J3_18654.1 of this group appears in releases 3.80 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 3-15 | 4-14 | 7-10 | 8-9 | 12-13 | |||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_5TBW_012 | 5TBW | 0.0000 | 1 | 1 | LSU rRNA | A | 2590 | A | 2591 | G | 2592 | A | 2593 | C | 2594 | A | 2595 | U | 2596 | U | 2597 | * | A | 2432 | U | 2433 | U | 2434 | G | 2435 | * | C | 2512 | U | 2513 | A | 2515 | U | 2516 | U | 2517 | cWW | ntSH | tSH | tHW | ncWw | cWW | cWW |
2 | J3_8C3A_008 | 8C3A | 0.0751 | 1 | 1 | LSU rRNA | A | 2562 | A | 2563 | G | 2564 | A | 2565 | C | 2566 | A | 2567 | U | 2568 | U | 2569 | * | A | 2410 | U | 2411 | U | 2412 | G | 2413 | * | C | 2490 | U | 2491 | A | 2493 | U | 2494 | U | 2495 | cWW | ntSH | tSH | tHW | ncWw | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AUUG*CUUAUU*AAGACAUU | 2 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UU*UUAU*AGACAU | 2 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 |
---|---|---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 |
Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Heat map statistics
- Min 0.08 | Avg 0.04 | Max 0.08
Coloring options: