J3_5H4P_019
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- AUGAAAAGAACU*AGAGUGAAAAAGUACG*CU
- Length
- 30 nucleotides
- Bulged bases
- 5H4P|1|1|A|398, 5H4P|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5H4P_019 not in the Motif Atlas
- Geometric match to J3_4V9F_012
- Geometric discrepancy: 0.1711
- The information below is about J3_4V9F_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24879.1
- Basepair signature
- cWW-cWW-cWS-tSH-F-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5H4P|1|1|A|369
5H4P|1|1|U|370
5H4P|1|1|G|371
5H4P|1|1|A|372
5H4P|1|1|A|373
5H4P|1|1|A|374
5H4P|1|1|A|375
5H4P|1|1|G|376
5H4P|1|1|A|377
5H4P|1|1|A|378
5H4P|1|1|C|379
5H4P|1|1|U|380
*
5H4P|1|1|A|389
5H4P|1|1|G|390
5H4P|1|1|A|391
5H4P|1|1|G|392
5H4P|1|1|U|393
5H4P|1|1|G|394
5H4P|1|1|A|395
5H4P|1|1|A|396
5H4P|1|1|A|397
5H4P|1|1|A|398
5H4P|1|1|A|399
5H4P|1|1|G|400
5H4P|1|1|U|401
5H4P|1|1|A|402
5H4P|1|1|C|403
5H4P|1|1|G|404
*
5H4P|1|4|C|19
5H4P|1|4|U|20
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain l
- 60S ribosomal protein L39
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
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