J3_5H4P_022
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 5H4P|1|1|A|895, 5H4P|1|1|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5H4P_022 not in the Motif Atlas
- Homologous match to J3_8P9A_050
- Geometric discrepancy: 0.1721
- The information below is about J3_8P9A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_21998.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5H4P|1|1|A|828
5H4P|1|1|U|829
5H4P|1|1|A|830
5H4P|1|1|G|831
*
5H4P|1|1|C|863
5H4P|1|1|G|864
5H4P|1|1|U|865
5H4P|1|1|A|866
5H4P|1|1|G|867
*
5H4P|1|1|U|892
5H4P|1|1|C|893
5H4P|1|1|G|894
5H4P|1|1|A|895
5H4P|1|1|A|896
5H4P|1|1|U|897
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain R
- 60S ribosomal protein L19-A
- Chain g
- 60S ribosomal protein L34-A
- Chain p
- 60S ribosomal protein L43-A
Coloring options: