J3_5H4P_026
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 5H4P|1|1|C|2760, 5H4P|1|1|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5H4P_026 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.093
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5H4P|1|1|G|2651
5H4P|1|1|U|2652
5H4P|1|1|C|2653
*
5H4P|1|1|G|2754
5H4P|1|1|C|2755
5H4P|1|1|C|2756
5H4P|1|1|U|2757
5H4P|1|1|A|2758
5H4P|1|1|U|2759
5H4P|1|1|C|2760
5H4P|1|1|G|2761
5H4P|1|1|A|2762
5H4P|1|1|U|2763
5H4P|1|1|C|2764
5H4P|1|1|C|2765
*
5H4P|1|1|G|2793
5H4P|1|1|G|2794
5H4P|1|1|U|2795
5H4P|1|1|G|2796
5H4P|1|1|C|2797
5H4P|1|1|C|2798
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain a
- 60S ribosomal protein L28
- Chain o
- 60S ribosomal protein L42-A
- Chain w
- 60S ribosomal export protein NMD3
Coloring options: